Mini Frittata Muffins Recipe (Easy Gluten-Free Breakfast Idea)

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Author: EmilyFrost
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Mini frittata muffins are the kind of breakfast that makes busy mornings feel calm and cared for. Packed with colorful veggies, creamy feta, and fresh herbs, they’re both satisfying and simple. Whether you’re hosting brunch, prepping school lunches, or trying to eat more protein on-the-go, these savory egg muffins are a gluten-free favorite. In this guide, I’ll walk you through how to make mini frittata muffins from scratch—fluffy, flavorful, and totally fuss-free. Plus, I’ll share make-ahead tips, baking times, and how they compare to quiches. Let’s dive in and get those muffin pans ready!

Table of Contents

Why Mini Frittata Muffins Are a Morning Hero

Mini frittata muffins: bite-size comfort in every bite

There’s something special about starting the day with a warm, homemade breakfast—especially when it’s as simple and satisfying as mini frittata muffins. I still remember the first time I made these for a weekend playdate. My youngest called them “egg cupcakes,” and honestly, the name stuck. These little guys saved me during back-to-school chaos and meal prep marathons. No forks, no stress, just one pan and a handful of veggies.

What I love most? You can mix and match what’s in season or whatever’s sitting in your fridge. This one has lots of feta cheese, onions, cherry tomatoes that are still juicy, and dill. The eggs puff up beautifully in the oven, giving you a light, fluffy texture that feels way fancier than the effort involved. And yes, they freeze well too!

The keyword mini frittata muffins is naturally included in the way I talk about this dish because that’s what they truly are: quick, protein-packed gems that belong in every breakfast rotation. Whether you’re feeding a crowd or just your own weekday cravings, these muffins deliver every time. They’re also completely gluten-free, which makes them perfect for brunches when you’ve got mixed dietary needs around the table.

What makes mini frittata muffins better than quiche?

Here’s where they win: there’s no crust to fuss with. That means it has fewer carbs and takes less time to make, but it still tastes like a quiche and is fluffy and tasty. You also get perfect portions, ready to grab-and-go. If you know how to make a regular frittata like the one in this guide, this small one is even easier.

And yes, you can absolutely cook frittata in muffin tins. It’s not just convenient—it’s genius. Speaking of genius, you might also enjoy these baked cottage cheese eggs if you’re on a breakfast prep spree.

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mini frittata muffins serving

Mini Frittata Muffins Recipe

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Mini frittata muffins are the perfect make-ahead breakfast—gluten-free, easy to reheat, and packed with veggies and protein.

  • Total Time: 32 minutes
  • Yield: 12 muffins 1x

Ingredients

Scale

Cooking spray or olive oil, for the pan

8 large eggs

⅓ cup unsweetened almond milk

1 garlic clove, minced

¼ teaspoon Dijon mustard

2 to 4 tablespoons chopped fresh dill

½ teaspoon sea salt

Freshly ground black pepper

2 small kale leaves, finely shredded

1 cup halved cherry tomatoes

¼ cup chopped scallions

⅓ cup crumbled feta cheese

Instructions

1. Preheat oven to 350°F and grease a muffin pan.

2. In a large bowl, whisk eggs, almond milk, garlic, mustard, dill, salt, and pepper.

3. Spoon a little egg mixture into each muffin cup.

4. Divide kale, tomatoes, scallions, and feta among cups.

5. Pour remaining egg mixture over the fillings evenly.

6. Bake for 20–22 minutes, until eggs are set.

7. Season with salt and garnish with dill.

8. Cool slightly before removing from the pan.

9. Store in the fridge for up to 4 days.

Notes

Swap kale for spinach or other greens.

Use dairy-free cheese to make it lactose-free.

Freeze extras for a quick weekday breakfast.

  • Author: EmilyFrost
  • Prep Time: 10 minutes
  • Cook Time: 22 minutes
  • Category: Breakfast, Gluten-Free
  • Method: Baked
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 95
  • Sugar: 1g
  • Sodium: 210mg
  • Fat: 6g
  • Saturated Fat: 2g
  • Unsaturated Fat: 3g
  • Trans Fat: 0g
  • Carbohydrates: 2g
  • Fiber: 0.5g
  • Protein: 7g
  • Cholesterol: 140mg

How to Make Baked Frittata Muffins from Scratch

The ultimate guide to baked frittata muffins (no soggy bottoms allowed)

When it comes to breakfast prep, few recipes beat the ease and versatility of baked frittata muffins. These little egg bites with no crust are perfect for busy cooks who have to deal with a crazy morning. With just a handful of ingredients, one bowl, and a muffin pan, you’ll have a batch of baked frittata muffins ready in under 30 minutes.

Let’s start with the basics. To get the perfect texture, always whisk the eggs thoroughly with a splash of milk—unsweetened almond milk works great for dairy-free versions. The liquid keeps the egg mixture tender while still allowing them to puff up into those golden, photo-worthy domes.

Once you’ve got the egg base ready, the real magic happens. Add-ins like fresh kale, juicy cherry tomatoes, chopped scallions, and crumbled feta transform plain eggs into flavor-packed, satisfying bites. You can swap kale for spinach, or use leftover roasted veggies for a fun twist. The key to evenly cooked baked frittata muffins is layering: start by adding a spoonful of the egg mixture to each muffin cup, then top with the fillings, and finish by covering everything with more egg.

Want foolproof results every time? Always grease the muffin tin thoroughly—either with cooking spray or olive oil. This step ensures you won’t lose half your muffins to the pan. Also, don’t overfill the cups. Leave a little space at the top because these baked frittata muffins will rise slightly before settling as they cool.

If you’re looking for a base recipe with customizable mix-ins, check out this meat lovers frittata for heartier inspiration. Or explore something equally high-protein like these protein cottage cheese pancakes to build out a full breakfast menu.

Baking time and temperature: dialing it in for perfect results

For most standard muffin tins, baking your baked frittata muffins at 350°F for 20 to 22 minutes gives the best result. The tops should look set and barely golden, with no liquid jiggling in the center. Insert a toothpick into one—it should come out clean. Overbaking can lead to rubbery muffins, so keep an eye on the oven after 18 minutes.

If you’re using a dark nonstick pan, reduce the baking time by a minute or two. On the flip side, silicone pans often require an extra minute. These are great to avoid sticking, but they insulate the eggs more.

Want to scale the recipe for meal prep? This recipe makes 12 muffins that are baked and ready to be stored. Once chilled, they can be frozen for up to two months or refrigerated for up to four days in an airtight container. To reheat, microwave for 30 seconds or pop them in a toaster oven until warm.

For more oven-friendly breakfast dishes, try this lemon raspberry cottage cheese bake or get cozy with a pumpkin cottage cheese bake—both are naturally gluten-free and pack a protein punch.

Mini Egg Muffins for Meal Prep and Flavor Variety

Why mini egg muffins are your weekly meal prep MVP

If you’ve ever found yourself skipping breakfast because mornings are too hectic, let me introduce you to mini egg muffins—your new favorite make-ahead solution. These little guys are compact, protein-rich, and endlessly customizable. Think of them as frittatas in muffin form, with all the flavor and none of the hassle.

The best part? They reheat beautifully. You can bake a full tray on Sunday, pop them in the fridge or freezer, and have breakfast covered for the week. Store cooked mini egg muffins in an airtight container in the fridge for up to 4 days. For longer storage, freeze them in a single layer on a baking sheet, then transfer to a freezer bag. To reheat, just microwave one or two for about 30–45 seconds, or warm them in the oven for a few minutes.

These are also ideal for school lunches, snack trays, or quick post-workout bites. Since they’re naturally gluten-free, they work well for mixed dietary needs—just avoid dairy if needed, or use lactose-free cheese. They’re a huge hit in my house, especially when I rotate flavors each week.

Looking for other grab-and-go protein-packed options? Try these cottage cheese chocolate mousse cups for a sweet fix or this homemade flourless cottage cheese bread for a hearty base to your breakfast sandwich.

Creative variations for your mini egg muffins (no repeats required)

You don’t need to stick to the same mix-ins every time. One of the best things about mini egg muffins is how adaptable they are. You can easily build a variety pack in a single batch by dividing your fillings among muffin cups before pouring in the eggs.

Here are some flavor combos to get you started:

Flavor ComboIngredients
MediterraneanSun-dried tomatoes, spinach, feta, oregano
SouthwestBlack beans, red bell pepper, cheddar, cumin
Garden VeggieZucchini, mushrooms, scallions, mozzarella
Classic Ham & CheeseDiced ham, shredded cheddar, chives

Use this format to make 3–4 mini frittata muffins flavors in one go without extra time in the kitchen. Just prep your add-ins in small bowls, and divide them evenly before pouring in the egg mixture.

For added richness or creaminess, whisk in a tablespoon of cottage cheese or shredded cheese into your egg base. You can even toss in cooked quinoa or finely diced potatoes to add texture. If you enjoyed this section, you might love this blueberry cottage cheese breakfast bake for something sweet to balance out your meal prep rotation.

Mini Frittata Muffins – Nutrition, Serving Tips & Hosting Ideas

How healthy are mini frittata muffins?

Mini frittata muffins are more than just a quick breakfast—they’re a powerhouse of nutrition in every bite. Made with protein-rich eggs, fresh vegetables, and flavorful cheese, these little muffins deliver a satisfying, low-carb, gluten-free start to your day. Each mini frittata muffin contains around 90 to 100 calories, depending on the mix-ins, and is packed with nutrients like vitamin A from kale, vitamin C from tomatoes, and calcium from feta.

Because they’re made without crust, mini frittata muffins are naturally lighter than traditional quiches or breakfast casseroles. They’re also easy to make dairy-free or vegetarian, just by swapping ingredients. Want to skip the cheese? No problem. Prefer spinach instead of kale? Go for it. These muffins adapt to your fridge and your needs.

If you’re building a balanced brunch menu, serve your mini frittata muffins with something cool and sweet like this cucumber peach salad or a side of peach quinoa salad for a colorful and fiber-filled pairing.

How to serve mini frittata muffins like a pro

Mini frittata muffins are great warm, room temp, or even cold—which makes them perfect for serving at brunches, baby showers, or school gatherings. To present them beautifully, arrange the muffins on a large wooden board with garnishes like avocado slices, grape tomatoes, and fresh herbs. A sprinkle of chopped dill or chives on top of each mini frittata muffin adds a fresh, finished look.

For grab-and-go meal prep, store mini frittata muffins in an airtight container in the fridge for up to four days. They’re easy to reheat in the microwave for 30 seconds or in a toaster oven for five minutes. You can also freeze them—just wrap each one in parchment, place in a freezer bag, and reheat as needed.

If you’re planning to serve a crowd, this recipe scales up effortlessly. Just use two muffin pans and rotate them halfway through baking to ensure even cooking. Don’t forget to lightly grease the cups—it’s the best way to keep your mini frittata muffins golden and intact.

Whether it’s breakfast on-the-go or part of a weekend feast, mini frittata muffins bring flavor, flexibility, and nutrition to every bite.

FAQ – Mini Frittata Muffins

Can you cook frittata in muffin tins?

Yes, you absolutely can cook frittata in muffin tins. In fact, it’s one of the easiest ways to make mini frittata muffins. Using a muffin pan allows for perfect portion sizes, even cooking, and less mess. It also helps the egg mixture set evenly and cook faster than a full-sized frittata.

How long do you bake a mini frittata?

Mini frittata muffins typically bake at 350°F for 20 to 22 minutes. They’re done when the tops are set and a toothpick comes out clean. Avoid overbaking, as that can cause a rubbery texture. Always check them around the 18-minute mark if your oven runs hot.

Should I bake mini muffins for less time?

Yes, mini muffins, including mini frittata muffins, usually need less time than full-size versions. Since they’re smaller and cook more quickly, 20 to 22 minutes is usually ideal. Always grease your muffin pan well and monitor the baking time closely to avoid overcooking.

What is the main difference between a quiche and frittata?

The biggest difference is the crust. Quiche includes a pastry crust and often has a richer custard base with cream, while mini frittata muffins are crustless and made with just eggs and milk. This makes frittatas lighter, naturally gluten-free, and quicker to prepare.

Conclusion

Mini frittata muffins are more than just cute—they’re functional, flavorful, and seriously crave-worthy. Whether you’re meal prepping for a busy week, hosting brunch, or just trying to eat better on the go, these muffins are a no-fuss solution. You can mix and match ingredients, make them ahead, and even freeze them for future meals.

As a mom always juggling schedules and ingredients, I’ve found that having a tray of mini frittata muffins in the fridge is the easiest way to guarantee we all start the day nourished and happy. Give them a try—your mornings (and your taste buds) will thank you.

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Emily Frost
Emily Frost

Hi, I’m Emily Frost — mom of two, home cook, and the creator of Frosty Recipes! Here you’ll find easy, family-friendly meals from Wendy’s copycat favorites to cozy dinners, sweet desserts, and everything in between.

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