Oh, you’re gonna love these cottage cheese pumpkin muffins – trust me! I’ve been baking for my family for years, and these little guys are the perfect sneaky way to pack some extra protein into our morning routine. The first time I whipped them up, my kids gobbled them down without even noticing the cottage cheese (shh, don’t tell them!). There’s something magical about how the pumpkin and warm spices hug that creamy cottage cheese, creating muffins so moist they practically melt in your mouth. And when those melty chocolate chips hit your tongue? Wow. Just wow. These have become our go-to for rushed school mornings and cozy weekend baking sessions alike. The best part? They come together so fast you’ll have them in the oven before your coffee finishes brewing. I’ve made this recipe more times than I can count, tweaking it until every bite was absolutely perfect. Now I’m sharing my foolproof version with you – because every busy home cook deserves a little muffin magic in their life!

Table of Contents
Table of Contents
Why You’ll Love These Cottage Cheese Pumpkin Muffins
Listen, I know what you’re thinking – cottage cheese in muffins? But hear me out, because these little beauties are absolute game-changers. They tick all the boxes:
- Protein-packed goodness: That cottage cheese isn’t just for texture – it gives each muffin about 5g of protein! My kids never suspect they’re eating something actually good for them when they’re reaching for seconds.
- Moist-for-days texture: The combo of pumpkin puree and cottage cheese creates the most tender crumb you’ll ever taste. No sad, dry muffins here – just pure, spiced deliciousness.
- Weekend-worthy, weekday-easy: I’m talking one bowl (okay, maybe two), 10 minutes of prep, and you’re done. Even my sleep-deprived self can manage this before coffee.
- Customizable flavors: Not feeling chocolate chips? Swap in walnuts or leave them plain. The pumpkin spice base is so good it can stand alone.
I’ve been making variations of these for years, and they never last more than a day in my house. That’s how you know they’re keepers!
Cottage Cheese Pumpkin Muffins Ingredients
Alright, let’s gather our goodies! Here’s what you’ll need to make these pumpkin muffins sing:

- 1 large egg – Room temp works best, but I’ve used cold eggs in a pinch and lived to tell the tale
- 1 cup cottage cheese – Small curd blends smoother, but any kind will do
- 1 cup pumpkin puree – Not pumpkin pie filling! That sweetened stuff will throw everything off (learned that the hard way)
- 1/2 cup maple syrup or honey – I use whatever’s closest when the baking mood strikes
- 3 tablespoons mild oil – Avocado oil’s my go-to, but we’ll talk subs below
- 1 teaspoon pure vanilla extract – The good stuff makes a difference!
- 1 tablespoon pumpkin pie spice – Fall in a bottle, am I right?
- 1 teaspoon cinnamon – Because you can never have too much warmth
- 1/2 teaspoon baking powder
- 1/2 teaspoon baking soda
- 2 cups all-purpose flour – Spooned and leveled, not packed!
- 1/2 cup mini chocolate chips – Regular chips work too, but minis distribute better
- 1/4 cup pumpkin seeds – For that perfect crunch on top
- Cooking spray – My Misto oil sprayer gets heavy use here
Ingredient Notes & Substitutions
Got questions? I’ve got answers from all my kitchen experiments:
- Oil options: Avocado oil’s neutral, but coconut oil (melted) or vegetable oil work great too. Butter? Maybe, but the texture changes.
- Sweetener swaps: The maple/honey combo can become all one or the other. Brown sugar works if you reduce liquids slightly.
- Mix-in ideas: Not a chocolate person? Try chopped pecans or walnuts. Raisins would be lovely too!
- Flour fact: Want gluten-free? A 1:1 GF blend works beautifully – just don’t overmix.
The cottage cheese is non-negotiable though – that’s our secret weapon!
How to Make Cottage Cheese Pumpkin Muffins
Okay, let’s get baking! I promise these come together so easily – even my seven-year-old helps sometimes. Here’s exactly how I make them, step by step:

Step 1: Mix Wet Ingredients
First things first – preheat that oven to 350°F (175°C). Trust me, you want it ready when your batter is. Now grab your big mixing bowl – I use my favorite speckled blue one. Crack in that egg and give it a quick whisk to break it up. Then plop in the cottage cheese, pumpkin puree, maple syrup (or honey), oil, and vanilla. Here’s my trick: whisk it like crazy for a good minute until it’s completely smooth. Those little cottage cheese curds should disappear into creamy perfection. The batter will look like a gorgeous orange dream at this point – I always sneak a taste!
Step 2: Combine Dry Ingredients
Now for the dry team. In another bowl (yes, I know, more dishes – but it’s worth it), whisk together the flour, pumpkin pie spice, cinnamon, baking powder, and baking soda. Pro tip: if your spices have been sitting awhile, give them a quick sniff first. Dull spices make dull muffins! I like to sift everything through my fingers to break up any flour lumps – it makes the final texture so much lighter.
Step 3: Fold & Bake
Here’s where the magic happens – but also where you need restraint! Dump the dry ingredients into the wet and gently fold with a spatula. I count to about 15 stirs – you want it just combined with some streaks of flour still visible. Overmixing = tough muffins, and we don’t want that! Now fold in those chocolate chips and pumpkin seeds with just a few turns.
Scoop the batter into your prepared muffin tin (I use an ice cream scoop for even portions – so much easier!). They should be about 2/3 full. Pop them in the oven for 20-25 minutes. The toothpick test is your friend here – it should come out with just a few moist crumbs, not wet batter. Oh, and that heavenly pumpkin spice smell filling your kitchen? That’s how you know they’re almost done!
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Cottage Cheese Pumpkin Muffins: 5g Protein Magic!
Moist and fluffy pumpkin muffins made with cottage cheese for extra protein. Packed with warm spices, chocolate chips, and topped with pumpkin seeds.
- Total Time: 35 minutes
- Yield: 12 muffins 1x
Ingredients
- 1 large egg
- 1 cup cottage cheese
- 1 cup pumpkin puree (not pumpkin pie filling)
- 1/2 cup maple syrup or honey
- 3 tablespoons mild oil (avocado oil recommended)
- 1 teaspoon pure vanilla extract
- 1 tablespoon pumpkin pie spice
- 1 teaspoon cinnamon
- 1/2 teaspoon baking powder
- 1/2 teaspoon baking soda
- 2 cups all-purpose flour
- 1/2 cup mini chocolate chips
- 1/4 cup pumpkin seeds
- Cooking spray (like Misto)
Instructions
- Preheat oven to 350°F (175°C). Lightly grease a muffin tin.
- Whisk egg, cottage cheese, pumpkin puree, maple syrup, oil, and vanilla in a large bowl.
- Mix pumpkin pie spice, cinnamon, baking powder, baking soda, and flour in a separate bowl.
- Fold dry ingredients into wet mixture until just combined.
- Gently stir in chocolate chips and pumpkin seeds.
- Divide batter evenly into muffin cups (2/3 full).
- Bake for 20-25 minutes until a toothpick comes out clean.
- Cool in pan briefly, then transfer to a wire rack.
Notes
- Use plain pumpkin puree, not pie filling.
- Avocado oil can be substituted with coconut or vegetable oil.
- Store in an airtight container for up to 3 days.
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Category: Baking
- Method: Oven-baked
- Cuisine: American
- Diet: Vegetarian
Nutrition
- Serving Size: 1 muffin
- Calories: 210
- Sugar: 12g
- Sodium: 150mg
- Fat: 7g
- Saturated Fat: 2g
- Unsaturated Fat: 4g
- Trans Fat: 0g
- Carbohydrates: 32g
- Fiber: 2g
- Protein: 5g
- Cholesterol: 20mg
Tips for Perfect Cottage Cheese Pumpkin Muffins
After making countless batches of these muffins (some great, some… learning experiences), here are my foolproof tips for bakery-quality results every time:
- Don’t overmix! I can’t stress this enough – stir just until the flour disappears. A few lumps are fine. Overworked batter leads to dense, sad muffins.
- Room temp ingredients blend together much smoother. Take that egg and cottage cheese out 30 minutes before baking.
- Fill evenly – I use an ice cream scoop to portion the batter. Uneven muffins mean some will burn while others stay raw.
- Rotate halfway if your oven heats unevenly like mine. Those back corners can get too toasty otherwise!
- Cool properly – 5 minutes in the pan, then transfer to a rack. Trapped steam makes soggy bottoms!
Storage & Reheating

Okay, let’s talk about keeping these muffins fresh because – let’s be real – they’re too good to waste! Once they’ve cooled completely (and I mean completely – no cheating!), store them in an airtight container at room temperature. They’ll stay moist and delicious for up to 3 days. I like to tuck a paper towel in the container to absorb any extra moisture – it’s a little trick I picked up from my grandma.
Now, if you’re like me and bake a double batch (because why not?), you can totally freeze these. Just wrap each muffin individually in plastic wrap, then pop them in a freezer bag. They’ll keep for up to 3 months. When you’re ready to enjoy, let them thaw at room temperature or zap them in the microwave for about 20 seconds. A quick tip: if you’re reheating, sprinkle a few drops of water on top first – it helps bring back that fresh-from-the-oven moisture. Trust me, it’s like they never left the oven!
Cottage Cheese Pumpkin Muffins FAQs
I get asked about these muffins all the time – seems like I’m not the only one obsessed! Here are answers to the questions that pop up most often:
Can I use Greek yogurt instead of cottage cheese?
Oh boy, I’ve tried this swap more times than I can count! While Greek yogurt can work in a pinch, the texture comes out totally different – denser and less fluffy. Cottage cheese has these magical little curds that melt into the batter while baking, creating air pockets for lift. If you absolutely must substitute, use full-fat Greek yogurt and expect a slightly heavier muffin. But honestly? Give the cottage cheese a chance – blended smooth, you’ll never know it’s there!
How to make gluten-free?
Easy peasy! My sister’s gluten-free, so I’ve perfected this version for her. Just swap the all-purpose flour with your favorite 1:1 gluten-free blend (I like Bob’s Red Mill). The key is to not overmix – GF flours can get gummy if you stir too much. And let the batter sit for 5 minutes before scooping – it helps the flour absorb moisture properly. They might bake up slightly denser, but still delicious!
Why did my muffins sink?
Ah, the dreaded muffin sinkhole! Been there. Usually it’s one of three things:
- Overmixing: Those gluten strands get too tough and can’t hold the rise
- Old leaveners: Check your baking powder/soda dates – they lose oomph over time
- Opening the oven too soon: Wait at least 18 minutes before peeking!
Next time, try mixing less and preheating your oven extra well. And don’t feel bad – my first batch looked like little pumpkin craters too!
Nutritional Information
Now, I’m no nutritionist (just a mom who likes to know what’s going into our food!), but here’s the scoop on what’s in these tasty muffins. Keep in mind these are estimates – your actual numbers might vary depending on exact ingredients and portion sizes. But hey, compared to most bakery muffins? These are practically health food!
Per muffin (makes 12):
- Calories: 210
- Sugar: 12g
- Sodium: 150mg
- Fat: 7g (2g saturated, 4g unsaturated, 0g trans)
- Carbohydrates: 32g
- Fiber: 2g
- Protein: 5g
- Cholesterol: 20mg
The cottage cheese really shines in the protein department here – that’s what makes these muffins so satisfying. And the pumpkin? Packed with vitamin A and fiber. Though let’s be real – we’re mostly here for that warm spice and melty chocolate combo! Just between us, I sometimes have two for breakfast and call it self-care.
Alright, my friends, it’s your turn to make some magic in the kitchen! I can’t wait for you to try these cottage cheese pumpkin muffins and see why they’ve become such a staple in my home. When you do (because I know you will!), snap a pic and tag me at #FrostyRecipes. There’s nothing I love more than seeing your creations and hearing how much your family enjoyed them. Whether it’s a cozy Sunday morning or a hectic weekday breakfast, these muffins are here to make your life a little sweeter – one chocolate chip-studded bite at a time. Now go preheat that oven – your new favorite muffin recipe awaits!