There’s something magical about the first bite of warm, spiced pumpkin chocolate chip muffins fresh from the oven. The soft pumpkin base paired with melty chocolate chips makes them a cozy fall favorite that’s perfect for breakfast, snacks, or dessert. This recipe uses simple pantry staples and comes together in just a few steps, so you can enjoy bakery-style muffins anytime at home.

Table of Contents
Table of Contents
What Makes Pumpkin Chocolate Chip Muffins Special?
Muffins vs. Cupcakes
A common question is whether muffins and cupcakes are really that different. While both share a similar baking process, the difference lies in texture and sweetness. Muffins like these pumpkin chocolate chip muffins are less sugary and rely on warm spices and pumpkin puree for natural depth of flavor. Cupcakes are typically lighter, sweeter, and often topped with frosting. These muffins strike the perfect balance: tender, moist, and filled with pockets of chocolate in every bite.
How They Compare to Pumpkin Bread
If you’ve baked pumpkin bread before, you’ll notice that pumpkin chocolate chip muffins have a similar flavor profile but a different form. Instead of a single loaf, you get perfectly portioned muffins that bake faster and are easier to serve. Muffins also give you more chocolate chips per bite, making them a kid-friendly and portable option compared to a loaf. For a fun twist, you might also enjoy the pumpkin chocolate chip bars on the site, which share the same flavor combo in bar form.
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Pumpkin Chocolate Chip Muffins – The Perfect Fall Bake
Soft, moist, and filled with warm spices, these pumpkin chocolate chip muffins are a perfect fall treat for breakfast, snacks, or dessert.
- Total Time: 35 minutes
- Yield: 12 muffins 1x
Ingredients
¾ cup white sugar
¼ cup vegetable oil
2 large eggs
¾ cup canned pumpkin
¼ cup water
1 ½ cups all-purpose flour
¾ teaspoon baking powder
½ teaspoon baking soda
½ teaspoon ground cinnamon
¼ teaspoon ground nutmeg
¼ teaspoon ground cloves
¼ teaspoon salt
½ cup semisweet chocolate chips
Instructions
1. Preheat the oven to 400°F (200°C). Grease or line a muffin pan.
2. Whisk sugar, oil, and eggs in a medium bowl. Stir in pumpkin and water.
3. Mix flour, baking powder, baking soda, cinnamon, nutmeg, cloves, and salt in a separate bowl.
4. Combine wet and dry mixtures, stirring just until blended.
5. Fold in chocolate chips.
6. Fill muffin cups 2/3 full with batter.
7. Bake for 20–25 minutes or until a toothpick comes out clean.
Notes
Store in an airtight container for up to 3 days.
Freeze for up to 3 months for make-ahead convenience.
Try variations with white chocolate chips, pecans, or a cream cheese swirl.
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Category: Dessert, Breakfast, Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Nutrition
- Serving Size: 1 muffin
- Calories: 220
- Sugar: 18g
- Sodium: 150mg
- Fat: 10g
- Saturated Fat: 3g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 29g
- Fiber: 2g
- Protein: 3g
- Cholesterol: 30mg
Ingredients for the Best Pumpkin Chocolate Chip Muffins
The Dry Ingredients

Every great muffin starts with a balance of flour and leavening. All-purpose flour creates the base structure, while baking powder and baking soda ensure the muffins rise properly. Cinnamon, nutmeg, and cloves bring that classic fall warmth that defines pumpkin chocolate chip muffins. A touch of salt balances the sweetness and deepens the flavors, keeping each bite satisfying.
The Wet Ingredients and Chocolate Chips
The star of this recipe is pumpkin puree, which keeps the muffins moist and flavorful. Pair it with eggs, vegetable oil, and a splash of water for a smooth batter. Sugar adds sweetness without overpowering the pumpkin. Finally, semisweet chocolate chips are folded in for bursts of rich flavor that melt into every bite. For variation, you can swap in white chocolate chips or even a mix of dark and semisweet for extra depth. If you enjoy experimenting, the creaminess of pumpkin cream cheese bread shows just how versatile pumpkin can be. For more streusel-like sweetness, try adapting the spiced topping from pumpkin streusel bread.
How to Make Pumpkin Chocolate Chip Muffins
Mixing the Batter the Right Way
Start by preheating the oven to 400°F and preparing a muffin pan with liners or a light coat of grease. In one bowl, whisk together sugar, oil, and eggs until smooth, then add pumpkin puree and water. In a separate bowl, combine flour, baking powder, baking soda, cinnamon, nutmeg, cloves, and salt. This separation keeps the batter light and prevents overmixing. Gently fold the wet and dry mixtures together, then stir in the chocolate chips. To avoid sinking chips, you can toss them in a little flour first, a trick often used when baking sourdough pumpkin muffins.
Baking and Cooling for Perfect Texture
Spoon the batter into muffin cups, filling each about two-thirds full. Bake for 20–25 minutes, or until a toothpick inserted in the center comes out clean. Let the muffins cool in the pan for a few minutes before transferring to a rack. This short rest allows them to firm up while staying moist inside. For variety, you could also adapt this recipe into mini muffins for quick snacks or jumbo muffins for a bakery-style treat. If you love unique bakes, try pairing these muffins with the cozy, slightly tangy flavor of pumpkin cottage cheese bake.
Variations, Storage, and Serving Tips for Pumpkin Chocolate Chip Muffins
Flavor Variations to Try

One of the best things about pumpkin chocolate chip muffins is how easily you can customize them. For a vegan version, swap the eggs with flax eggs and use dairy-free chocolate chips — a trick similar to how vegan pumpkin bread achieves its soft texture without animal products. If you’re aiming for a gluten-free loaf, replace the flour with a 1:1 gluten-free mix, though the texture may be slightly different. Healthier swaps are also an option: use applesauce instead of oil or reduce the sugar for a less sweet muffin. For extra indulgence, fold in walnuts, pecans, or even swirl in cream cheese for richness, like the flavors in snickerdoodle pumpkin bread.
Storing and Serving Your Muffins
These muffins stay moist and tender at room temperature for up to 3 days when stored in an airtight container. To keep them longer, refrigerate for up to a week or freeze for 2–3 months. When reheating frozen muffins, a quick warm-up in the microwave or oven brings back that fresh-from-the-oven taste. Serve them warm with butter, cream cheese, or even a drizzle of honey for breakfast. They also pair beautifully with coffee or tea for an afternoon snack. If you’re baking ahead for gatherings, consider doubling the batch — pumpkin chocolate chip muffins disappear quickly!
Frequently Asked Questions About Pumpkin Chocolate Chip Muffins
What’s the difference between chocolate chip muffins and cupcakes?
Chocolate chip muffins are typically less sweet, have a denser crumb, and don’t require frosting, while cupcakes are lighter, sweeter, and often frosted. Muffins are ideal for breakfast or snacks, while cupcakes lean more toward dessert.
How do you keep chocolate chips from sinking in pumpkin bread or muffins?
Toss the chocolate chips in a little flour before folding them into the batter. This helps them stay suspended and evenly distributed instead of sinking to the bottom.
What are the two ingredients in pumpkin muffin mix?
Store-bought pumpkin muffin mixes often simplify things down to just a dry flour-spice mix and a can of pumpkin puree. This homemade recipe goes beyond that with richer flavor from real spices and fresh add-ins.
Can you freeze pumpkin muffins?
Yes! Pumpkin chocolate chip muffins freeze well for up to 3 months. Cool them completely, wrap individually, and store in an airtight freezer bag. Thaw at room temperature or warm them in the oven for that just-baked taste.
Conclusion
Pumpkin chocolate chip muffins are the perfect balance of cozy fall spices and melty chocolate goodness. They’re simple to make, easy to customize, and ideal for everything from weekday breakfasts to holiday gatherings. Once you bake a batch, they’ll quickly become a family favorite you’ll want to make again and again.
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