Nothing beats the smell of warm muffins filling the kitchen on a rushed weekday morning. That’s why I’ve fallen head over heels for these blueberry cheesecake cottage cheese muffins – they’re my secret weapon for sneaking protein into my kids’ breakfast while keeping things delicious. I stumbled on this recipe during one of those chaotic school mornings when cereal just wasn’t cutting it. Now? My two little ones beg for these tender, slightly tangy muffins packed with juicy blueberries. The cottage cheese makes them incredibly moist, and the oats give them just enough heartiness to keep everyone full until lunch. Trust me, these aren’t your average muffins – they’re a breakfast game-changer that’ll have your family licking their fingers and asking for seconds.

Table of Contents
Table of Contents
Why You’ll Love These Blueberry Cheesecake Cottage Cheese Muffins
Let me tell you why these muffins have become a staple in my kitchen—and why they’ll steal your heart too:
- Protein powerhouse: Cottage cheese and Greek yogurt pack each bite with 5g of protein, keeping you full for hours.
- Wholesome ingredients: No refined flour or sugar—just oats, almond flour, and natural sweetness from blueberries and applesauce.
- Meal prep magic: Whip up a batch on Sunday, and you’ve got grab-and-go breakfasts all week.
- Kid-approved: My picky eaters gobble these up, never guessing they’re eating cottage cheese!
- Cheesecake vibes: That creamy tang? Pure breakfast bliss without the guilt.
Ingredients for Blueberry Cheesecake Cottage Cheese Muffins
Here’s everything you’ll need to whip up a batch of these protein-packed beauties – I promise it’s all simple stuff you might already have in your pantry!
- 1 cup cottage cheese (low-fat or full-fat works great – just drain it if it’s watery)
- 1 cup rolled oats (old-fashioned, not instant)
- 1/2 cup unsweetened applesauce (the secret to keeping them moist!)
- 1/2 cup blueberries (fresh or frozen – if using frozen, thaw and pat them dry)
- 1/2 teaspoon vanilla extract (use the real stuff, not imitation)
- 1 teaspoon baking powder (make sure it’s fresh for best rise)
- 1/2 teaspoon cinnamon (I always add an extra pinch because why not?)
- 1/4 cup Greek yogurt (plain or vanilla both work)
- 1 large egg (room temperature blends better)
- 1/4 cup almond flour (gives them that perfect crumb)
- 1/4 teaspoon salt (balances the sweetness just right)
Ingredient Notes & Substitutions
Don’t stress if you’re missing something – here’s how to adapt based on what’s in your kitchen:
Out of applesauce? Honey or maple syrup works in a pinch (use 1/4 cup instead of 1/2 cup since they’re sweeter). No almond flour? Just add an extra 1/4 cup oats and pulse them in the blender until flour-like. If cottage cheese texture bothers you, blend it smooth first – I do this when my kids are being extra picky! And while fresh blueberries are lovely, frozen work perfectly too (just pat them dry to prevent purple streaks in your batter). The muffins will forgive most substitutions – I’ve made them at least a dozen different ways! If you enjoy baking with cottage cheese, you might also love my recipe for Blueberry Cottage Cheese Mug Cake Recipe.
How to Make Blueberry Cheesecake Cottage Cheese Muffins
Okay, let’s get baking! These muffins come together faster than you can say “second breakfast” – here’s exactly how I make them every single time:

Step 1: Prep the Batter
First things first – preheat that oven to 350°F (175°C). Trust me, starting with a properly heated oven makes all the difference. While it’s warming up, grab your blender or food processor (or just roll up your sleeves for some good old-fashioned elbow grease). Toss in the cottage cheese, applesauce, Greek yogurt, egg, and vanilla. Blend until it’s smoother than a jazz playlist – little cottage cheese lumps are fine, but you want it mostly creamy.
In another bowl, whisk together your dry ingredients: oats, almond flour, baking powder, cinnamon, and that pinch of salt. Now comes the fun part – gently stir the dry mix into the wet ingredients. Don’t go wild with mixing; just until you stop seeing flour streaks. Then, ever so carefully, fold in those gorgeous blueberries. I use a rubber spatula and pretend I’m tucking them into bed – gentle strokes prevent berry explosions! For more high-protein baking ideas, check out my Fajita Chicken Cottage Cheese Bake Recipe.
Step 2: Bake to Perfection
Line your muffin tin with papers or give it a good spritz of cooking spray. Scoop that beautiful batter in, filling each cup about 3/4 full (I use an ice cream scoop for perfect portions). Pop them in the oven and set your timer for 20 minutes – but don’t wander off! At the 20-minute mark, do the toothpick test. If it comes out clean or with just a few moist crumbs, they’re done. If not, give them another 2-3 minutes. Watch closely – nobody likes overbaked muffins!
When they’re golden with slightly crisp tops, pull them out and resist the urge to dive in immediately. Let them cool in the pan for 5 minutes (this prevents muffin-top casualties), then transfer to a wire rack. The hardest part? Waiting until they’re cool enough to eat without burning your tongue!
Tips for Perfect Blueberry Cheesecake Cottage Cheese Muffins
After making these muffins more times than I can count, here are my foolproof tips to guarantee bakery-worthy results every single time:
- Don’t overmix! Stir the batter just until combined – lumps are your friend. Overworking it makes muffins tough.
- Grease those liners well (or skip them entirely). I learned the hard way that healthy muffins love to stick.
- Cool in the pan for 5 minutes before transferring – this prevents muffin tops from tearing off.
- Pat frozen berries dry with paper towels to avoid purple batter streaks.
- Room temp ingredients blend better – take that egg and yogurt out 30 minutes early.

5-Ingredient Blueberry Cheesecake Cottage Cheese Muffins
Protein-packed blueberry cheesecake cottage cheese muffins perfect for breakfast or snacks.
- Total Time: 35 minutes
- Yield: 12 muffin bites 1x
Ingredients
- 1 cup cottage cheese
- 1 cup rolled oats
- 1/2 cup unsweetened applesauce
- 1/2 cup blueberries
- 1/2 teaspoon vanilla extract
- 1 teaspoon baking powder
- 1/2 teaspoon cinnamon
- 1/4 cup Greek yogurt
- 1 egg
- 1/4 cup almond flour
- 1/4 teaspoon salt
Instructions
- Preheat your oven to 350°F (175°C). Grease a muffin tin or line it with muffin liners.
- In a large bowl, combine cottage cheese, applesauce, Greek yogurt, egg, and vanilla extract. Mix until smooth.
- In a separate bowl, mix rolled oats, almond flour, baking powder, cinnamon, and salt. Gradually add to wet ingredients, stirring gently.
- Fold in blueberries carefully.
- Scoop batter into muffin tin, filling each cup 3/4 full. Bake for 20-25 minutes or until a toothpick comes out clean.
Notes
- Let muffins cool in the pan for a few minutes before transferring.
- Store in an airtight container in the fridge for up to 5 days.
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Low Lactose
Nutrition
- Serving Size: 1 muffin bite
- Calories: 90
- Sugar: 4g
- Sodium: 120mg
- Fat: 2g
- Saturated Fat: 0.5g
- Unsaturated Fat: 1g
- Trans Fat: 0g
- Carbohydrates: 12g
- Fiber: 2g
- Protein: 5g
- Cholesterol: 20mg
Serving & Storing Blueberry Cheesecake Cottage Cheese Muffins

These muffins taste best warm from the oven (that first bite of melty blueberries – wow!), but they keep beautifully too. Just pop cooled muffins in an airtight container in the fridge for up to 5 days. When you’re ready to enjoy, 15 seconds in the microwave brings back that fresh-baked magic. My kids love them cold straight from the fridge too – perfect for rushed mornings when every minute counts!
Blueberry Cheesecake Cottage Cheese Muffins FAQ
I get asked these questions all the time – here’s everything you need to know about making these muffins work for your kitchen:
- Can I use frozen blueberries? Absolutely! Just thaw them first and pat dry with paper towels to prevent color bleeding. I actually keep a bag of frozen berries in my freezer specifically for muffin emergencies.
- What if I don’t have almond flour? No worries – pulse an extra 1/4 cup oats in your blender until flour-like. The texture changes slightly, but they’re still delicious.
- Can these muffins be frozen? Yes! They freeze beautifully for up to 3 months. I wrap them individually in plastic wrap, then toss them in a freezer bag. Thaw overnight in the fridge or zap in the microwave for 30 seconds.
- Are these gluten-free? They can be if you use certified gluten-free oats. Just check all your labels carefully!
Nutritional Information
Just between us – I’m no nutritionist, but I do love knowing what’s going into my family’s breakfast! These numbers are estimates based on my typical ingredients, but your exact counts might vary depending on brands and berry sizes. Here’s the scoop per muffin:
- Calories: 90
- Protein: 5g (that cottage cheese really pulls its weight!)
- Carbs: 12g
- Fiber: 2g
- Sugar: 4g (all natural from the blueberries and applesauce)
- Fat: 2g
Honestly, I don’t stress too much about exact numbers – what matters is these muffins pack way more nutrition than most grab-and-go breakfasts. My kids get protein, fruit, and whole grains all in one delicious package. Now if you’ll excuse me, I need to go “quality test” another warm muffin… purely for research purposes, of course!
I’d love to hear how your blueberry cheesecake cottage cheese muffins turn out! Did your kids gobble them up like mine do? Did you try any fun twists like adding lemon zest or swapping in raspberries? Drop a comment below to let me know – your baking adventures always inspire me to try new variations. And if you snap a photo of your muffin masterpiece, tag me @FrostyRecipes on Instagram! There’s nothing I love more than seeing your kitchen creations. Happy baking, friends – may your muffins always rise perfectly and your blueberries stay perfectly distributed (we can dream, right?).
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