There’s something irresistibly nostalgic about warm apples baked into a creamy, cinnamon-scented dish—and this keto apple cottage cheese bake hits that sweet spot without kicking you out of ketosis. Growing up, my mom always made a rustic apple pudding on chilly weekends, and it filled the kitchen with the coziest aroma. As a busy mom now myself, I wanted to recreate that comfort in a healthier, low-carb way that fits into my keto lifestyle.
This recipe came from one of those “aha” moments during a Sunday meal prep session. I had cottage cheese, a couple apples, and almond flour. I experimented a little, crossed my fingers, and the result was this delightful keto cottage cheese bake with apples that’s now a staple in my weekly rotation.
Whether you’re already hooked on cottage cheese bakes or simply looking for a sweet treat that aligns with your keto goals, this easy apple bake delivers big on taste and texture with simple ingredients. Let’s dive into why this is a must-make!

Table of Contents
Table of Contents
Why This Keto Apple Cottage Cheese Bake Belongs on Your Weekly Menu
A high-protein dessert that feels like comfort food
This bake uses low-fat cottage cheese as its creamy, protein-packed base, delivering that indulgent, pudding-like texture without excess carbs. What makes it even more special is how well it satisfies that apple pie craving—without the crust, sugar, or guilt. Each serving feels like a decadent treat, but it’s actually balanced and nourishing.
Apples might not be the first thing you think of on keto, but used smartly and portioned right, they can absolutely work. The diced apple pieces in this recipe add natural sweetness and a soft, chewy bite, especially when paired with cinnamon and vanilla extract. Plus, a touch of maple-flavored sweetener keeps the flavors classic and cozy. The apple crumble variation is also worth trying if you’re into layered textures.
Quick prep, minimal cleanup, and totally family-approved
One of the best things about this keto apple cottage cheese bake is how fast it comes together. Everything mixes in one bowl, then bakes into a golden, spoonable delight that smells like an autumn candle. If you’re juggling a busy weeknight or planning a weekend brunch, this is your go-to.
It’s also great for meal prep. Bake it once, portion it out, and enjoy it warm or chilled. The kids love it with a dollop of whipped cream, and I enjoy mine with some crushed pecans for extra crunch. If you’re into protein-packed sweets, this one checks all the boxes—and it’s gluten-free too!
Before we walk through the simple recipe steps, here’s everything you’ll need to make it.
Ingredients You’ll Need
| Ingredient | Amount |
|---|---|
| Low-fat cottage cheese | 2 cups |
| Apples, peeled and diced | 2 medium |
| Eggs | 2 |
| Almond flour | 1/4 cup |
| Sugar-free sweetener or maple syrup | 2 tablespoons |
| Cinnamon | 1 teaspoon |
| Vanilla extract | 1/2 teaspoon |
| Salt | Pinch |

Keto Apple Cottage Cheese Bake: A Cozy Low-Carb Dessert You’ll Crave
This Keto Apple Cottage Cheese Bake is a cozy, high-protein, low-carb dessert made with cottage cheese, almond flour, and a touch of cinnamon. It’s easy, satisfying, and perfect for any keto-friendly meal plan.
- Total Time: 40 minutes
- Yield: 6 servings 1x
Ingredients
2 cups low-fat cottage cheese
2 medium apples, peeled and diced
2 eggs
1/4 cup almond flour
2 tablespoons maple syrup or sugar-free sweetener
1 teaspoon cinnamon
1/2 teaspoon vanilla extract
Pinch of salt
Instructions
1. Preheat oven to 350°F (175°C) and lightly grease a small baking dish.
2. In a bowl, mix cottage cheese, eggs, almond flour, sweetener, cinnamon, vanilla, and salt until well combined.
3. Fold in diced apples, then pour mixture into the prepared baking dish.
4. Bake for 25–30 minutes, or until set and lightly golden on top.
5. Let cool slightly before serving warm.
Notes
Store leftovers in an airtight container in the fridge for up to 4 days.
Reheat gently in the microwave or enjoy cold for a firmer texture.
Top with whipped cream or chopped nuts for added flavor.
- Prep Time: 10 minutes
- Cook Time: 30 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 slice
- Calories: 130
- Sugar: 4g
- Sodium: 180mg
- Fat: 7g
- Saturated Fat: 2g
- Unsaturated Fat: 4g
- Trans Fat: 0g
- Carbohydrates: 7g
- Fiber: 1g
- Protein: 11g
- Cholesterol: 60mg
How to Make This Keto Apple Cottage Cheese Bake the Easy Way
Simple steps for perfect texture every time

Making this keto apple cottage cheese bake couldn’t be easier. With just one bowl and a small baking dish, you’ll have a low-carb treat baking in under 10 minutes. The best part? No complicated techniques or fancy tools. Just everyday ingredients coming together in a warm, protein-rich dessert.
Start by preheating your oven to 350°F (175°C). Grease your baking dish lightly to prevent sticking. In a medium bowl, combine your cottage cheese, eggs, almond flour, sweetener, cinnamon, vanilla extract, and a pinch of salt. Stir until smooth and evenly mixed—this is your base. The cottage cheese gives it a creamy consistency while the almond flour helps hold everything together.
Next, fold in your diced apples. You want them cut small and evenly so they bake quickly and distribute sweetness throughout the dish. Pour the mixture into your greased baking dish and smooth out the top. Pop it into the oven and let it bake for 25 to 30 minutes, until the top is set and golden. Let it cool slightly before serving for the best flavor and texture.
If you love other cottage cheese breakfast options like this morning glory bake, you’ll definitely enjoy this one—it’s just as satisfying but with a dessert-like twist.
Tips to keep it keto and delicious
While apples naturally contain carbs, this recipe uses just enough to give you that classic apple dessert flavor without going overboard. For strict keto eaters, consider using a low-carb apple variety like Granny Smith and monitor your portion sizes.
The almond flour keeps the bake gluten-free and low-carb while adding a nutty flavor. You can substitute it with coconut flour if needed, but use less since it’s more absorbent. For sweetener, go with a monk fruit or erythritol blend to maintain that keto-friendly profile without spiking blood sugar.
Want to switch things up? Add a sprinkle of chopped pecans on top before baking for a crunchy finish. Or try mixing in a pinch of nutmeg for an extra layer of cozy spice. If you loved the pumpkin pecan version, this apple version will feel like the next step in your low-carb baking journey.
Why This Keto Apple Cottage Cheese Bake Works for Your Low-Carb Lifestyle
Nutrition breakdown and macro-friendly balance
One of the biggest perks of this keto apple cottage cheese bake is how well it fits into a low-carb, high-protein meal plan. Each serving is rich in protein, moderate in healthy fats, and keeps the net carbs in check—making it ideal for anyone following a ketogenic diet. With just a few simple ingredients, you’re nourishing your body and satisfying your cravings at the same time.
Here’s an approximate breakdown per serving (based on 6 servings total):
| Macro | Amount |
|---|---|
| Calories | 120–140 |
| Protein | 10–12g |
| Fat | 6–8g |
| Net Carbs | 5–6g |
This makes it a great dessert or snack that won’t spike your blood sugar or knock you out of ketosis. And because it’s so filling, it’s an ideal choice to help curb those evening sweet cravings while still meeting your macro goals.
Benefits of cottage cheese and apples on keto
You might be surprised to see apples in a keto recipe, but when used mindfully, they can add flavor and fiber without overloading on carbs. A small portion of diced apples adds natural sweetness and moisture to this bake. When paired with high-protein ingredients like cottage cheese and eggs, you create a more balanced and satisfying treat.
Cottage cheese, in particular, is an underrated keto-friendly food. It’s low in carbs and high in casein protein, which digests slowly and keeps you fuller longer. That’s why recipes like creamy apple cottage cheese bake and cottage cheese banana bars are becoming popular among health-conscious foodies.
This dish not only satisfies your sweet tooth, but it also supports your nutritional goals with clean, whole-food ingredients. Perfect for a cozy fall evening or any time you need a warm keto dessert that’s as good as it smells.
Storage Tips, Variations & How to Serve This Keto Apple Cottage Cheese Bake
How to store and enjoy leftovers (if there are any!)

This keto apple cottage cheese bake stores beautifully, making it perfect for meal prep or enjoying over a few days. Once cooled, cover the dish tightly with foil or transfer leftovers into an airtight container. Store it in the fridge for up to 4 days.
To reheat, pop a slice into the microwave for 30–45 seconds or warm it in a 300°F oven until heated through. It reheats well without drying out, thanks to the moisture from the apples and cottage cheese.
Prefer it cold? You’re not alone. This bake firms up slightly after chilling, creating a creamy, cheesecake-like texture that’s fantastic straight from the fridge—similar to the texture in cottage cheese apple pie bites.
Creative variations and keto-friendly twists
This keto-friendly bake is incredibly adaptable. Want a fall-inspired version? Try swapping the apples for pumpkin purée and adding pumpkin pie spice—you’ll get something similar to this pumpkin cream cheese bake, but with fewer carbs.
Craving crunch? Top the bake with chopped walnuts or sliced almonds before baking for a nutty, golden crust. You could even sprinkle in flaxseed or chia seeds for a fiber boost without sacrificing flavor.
For a richer texture, blend the cottage cheese before mixing—it creates a smoother base. And if you’re looking for a portable version, bake the mixture in muffin cups for single-serve portions you can grab and go, just like cottage cheese protein brownie bites.
Pair it with a cup of coffee in the morning or serve warm with a dollop of whipped cream for a keto dessert that feels like a hug. However you enjoy it, this keto apple cottage cheese bake brings comfort, flavor, and nutrition together in every bite.
FAQs About Keto Apple Cottage Cheese Bake
Is apple cottage cheese bake keto-friendly?
Yes, when made with low-carb sweetener and a small amount of apple, this cottage cheese bake fits well into a keto lifestyle. Just be mindful of your apple quantity to stay within your daily carb limit.
Can you substitute almond flour in a keto cottage cheese bake?
Absolutely. Coconut flour can be used as a substitute, but you’ll need less of it—about one-third of the amount of almond flour. Adjust for texture accordingly.
How many carbs are in a keto apple cottage cheese bake?
Each serving contains about 5–6 grams of net carbs, depending on your specific ingredients and sweetener used. It’s a great low-carb dessert option for keto followers.
Is cottage cheese good for a keto dessert?
Yes. Cottage cheese is high in protein, low in carbs, and adds creaminess to desserts. It’s especially helpful in keto recipes like this one because it satisfies hunger and keeps sugar levels steady.
Conclusion
This keto apple cottage cheese bake is a simple, satisfying way to bring cozy apple flavors into your low-carb lifestyle. Whether you’re serving it warm for dessert or slicing a chilled piece for breakfast, it’s a treat that doesn’t derail your goals. Packed with protein, just the right amount of carbs, and that sweet-spiced apple flavor, this recipe is one you’ll come back to week after week.
If you enjoyed this bake, don’t miss out on trying the apple crumble version next—it’s equally comforting with a little crunch on top.
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